December 4

Lab 13- Isolating and Classifying Ciliates 11/16

Purpose:

The purpose of this lab was to continue to isolate ciliates from our sample and take pictures of the ciliates we find. The pictures will later help us analyze what kind of ciliate we discovered. We will use the pictures and data in our final presentation about our soil.

Procedure:

  • obtain our Petri dish soil samples from the previous class
  • also grab our 24 well plate with ciliates we captured from the previous class
  • Observe both the well plate and Petri dish under the dissecting microscope in order to see if there are still nay ciliates visible
  • Pipette 5 ul of either your soil sample or already captured ciliate onto a slide in order to observe under a compound microscope
  • Once you capture an isolated ciliate bring it over to the camera to take pictures

Data

  • I was not able to find any ciliates in either the well plate I had nor my Petri dish
  • My lab partners did not find anything either so we resorted to getting a sample from Dr. Adair’s plant
  • I was able to isolate one ciliate and obtain pictures

Conclusion:

I was only able to isolate and take pictures of the one ciliate during the two classes. This lab made me realize that it was a lot harder to find ciliates than I thought. Maybe it was because I didn’t dig deep enough in the soil or the soil wasn’t super rich. Being able to find at least one ciliate did give us enough information to begin to put our final presentation together. The pictures were a little blurry so we had a tough time trying to classify the ciliate.

December 4

Lab 12- Evaluation of Soil 11/9

Purpose:

The purpose of this lab was to find the composition of our soil and be able to classify it a little better. We also looked again at our flooded plates and attempted to capture ciliates from it.

Procedure:

We were instructed to grab our falcon tube from the previous class and find the texture of it. We used a ruler next to it in order to measure how much of it was clay, sand, and silt. We then used a chart to find out what we would classify it.

Clay- 0.3 cm/ 17%

Silt- 0.2 cm/ 11%

Sand- 1.25 cm/ 71%

All together- 1.75 cm = Sandy Loam

Conclusion:

I was unable to locate any ciliates in my soil. The texture of my soil was sandy loam. It was interesting to see all the different types of soil that exists all around Baylor’s campus. Since all the soil was so different that it would make sense that everyone would have as good of a chance at finding ciliates.

December 4

Lab 11- Soil Ciliate Discovery 11/2

Purpose:

The purpose of this lab was to start to analyze the soil we had obtained in the beginning of the semester. We calculated the water content of our soil and created our non-flooded plate. We also found out the pH and set up our samples in order to find the texture of it next class.

Prodecure:

In order to find water percentage I used the weight I had of it from the beginning of the semester which was 26.3g. I then found the dry weight which was 21.1g. I then subtracted the weight of the Petri dish from both of the weights which was 11.2g. In order to find the percent of water I divided the cry weight by the wet soil multiplied by 100. This then ended up to be (9.9/15.1)x100 which equaled 34.4% water.

In order to find the pH I put 3 mL of soil into a Falcon tube and filled it roughly to the 8 mL mark with D.I. water. We let it sit then took out 1 mL of the water on top and put it in a centrifuge to tube and mixed it in the vortex for a minute. We then put in the pH paper and compared the color of it to find the pH. The pH of my sample was 6.5.

We then made a non-flooded plate with our samples. We added a small amount of water to the Petri dish in order to moisten the soil and not flood it. We were instructed to come in and look at it after 24, 96, and the following week on the dissecting microscope in order to see if there were any ciliates.

We added a dispersing agent to our falcon tubes and stored them to look at the following week in order to determine texture.

Conclusion:

This lab helped us to calculate the water content as well as find out the pH of our soil. This helps us to classify everyones soil a little better. Knowing the differences in the soil it can help us to figure out what factors may have changed the results in finding ciliates or not.

December 4

Lab 10: Results Presentations 10/26/17

Purpose: The purpose of this lab was to let each group have the opportunity to present their final findings and graphs. Everyone was able to get some critiques in order to make a better final figure for their final lab report.

Procedure: Each group crated a final figure and caption based on their data. They used the cell counts, t-test, and p value. They were able to tell based on this data if it was significant or not particularly based on their p value.

Results:

Our figure was good but did a couple adjustments. Overall our p value was a lot lower than the accepted amount of so our data was not very significant.

 

December 4

Lab 1 Soil Collection and BioBlitz (08/30/17)

Objective:

The purpose of this lab is to obtain soil needed for the research we are planning to complete in the research lab. We shall learn and form good researching skills and habits that will be helpful in future graduate studies.

Procedure.

  1. Gather soil near a tree on campus and put an appropriate amount in a Ziploc bag.
  2. Record the environmental details such as the temperature, pressure, and exact location of  where the soil retrieved.
  3. Weigh the mass of the soil using a petri dish and an electronic scale.

Findings/Data

Storage

  • The soil sample I obtained was kept in the petri  dish and labelled with my name and placed in the drawer next to the desks.
December 4

Lab 7: The Effect of NH4Cl on the Tetrahymena Population (10/5/17)

Purpose:

  • In this lab, the objective was to begin our investigation of whether or not the use of a fertilizer agent NH4Cl has an effect on the Tetrahymena population.

Procedure

  1. Gather a 24-plated well and add 450 microliters of PPT media onto the top 3 wells
  2. The researchers will then add 50 microliters of the Tetrahymena stock culture and mix it. This will be the first dilution made(1:10)
  3. More serial dilutions will be created by continuing this along those three wells. After each of the dilutions have been formed, take 10 microliter drops from each well and count the number of cells in each of the drops.
  4. Once the average cell count is obtained, in each well 950 microliters of PPT media was added where 3 of the wells would be the control and another 3 would be the treatment group.
  5. In the 3 control group wells, 20 microliters of water would be added and mixed whereas in the treatment group 20 microliters of NH4Cl would be added.
  6. Once a 24 hour time period passes then 10 microliters of iodine is placed in the control and treatment wells.

Results/Findings

Conculsion

  • This experiment allowed the researchers to better understand the kind of impact that NH4Cl has on the population of Tetrahymena. Also, this effect of the Tetrahymena can lead pave the road for future studies to further investigate how this fertilizer with NH4Cl can affect this model organism.
December 4

Lab 6 (09/28/17)

Purpose:

  • In this lab, the purpose of the lab was to make Tetrahymena solutions of a certain concentration and determine whether or not NaCl has an effect on the Tetrahymena population.

Procedure:

  1. First, the resaerchers retrieved the Tetrahymena culture stock solution and PPT media.
  2. 90 microliter of the PPT media  was added to 4 tubes each along with 10 microliter of the undiluted Tetrahymena stock.
  3. The researcher then attempted to count the number of cells in the three different drops.
  4. Sodium chloride was added to the concavity slides and the effects on the Tetrahymena was then observed by counting the number of cells that are currently present.

Result/Findings:

Conclusion:

  • This lab, just like the previous one, emphasized the importance of using serial dilutions to calculate the number of Tetrahymena in the sample. Also, the researchers determined that the NaCl did not have an effect on the Tetrahymena population in the samples that were treated with NaCl.
December 3

Lab 5: Serial Dilutions (09/21/17)

Purpose:

  • In this lab, the objective was to determine how to calculate the number of cells through the use of serial dilutions by finding the concentration.

Procedure.

  1. The researchers gathered the materials needed for this lab such as a compound microscope, a concavity slide, PPT, and micro pipettes.
  2. First, 450 microliters of PPT was added to the tube and 50 microliters of the Tetrahymena culture was also added to this tube.
  3. The contents were then mixed and 10 microliters of the solution was then transferred using a micropipette and the researchers then counted the number of cells present in that drop.
  4. The researhcer will then make a 1:10 dilution by using 90 microliters of PPT and added 10 microliters of the Tetrahymena solution from the previous solution.
  5. This process was repeated until the cells were easily counted thus allowing the researchers to determine the concentration of the Tetrahymena culture.

Conclusion

  • Overall the lab allowed the researchers to develop the skill of creating serial dilutions in order to effectively count cells and use micropipettes.
December 2

Lab 13: Ciliate Extraction and Observation

Purpose:

  • The purpose of this lab was to extract the ciliate from the soil sample and identify the type of ciliate in the sample

Procedure

  1. Utilize a concavity slide and put a drop from the soil sample onto the slide and put the slide under the compound microscope and search for ciliates.

 

Results:

Some ciliates were found but it was difficult to view the morphological structures.

Conclusion:

  • It was very difficult to discern unique morphological structures from the images we found in the compound microscope.
December 2

Lab 12: Analyzing Soil Data

Purpose

  • The purpose of this lab was to classify the ciliates present in our soil sample and to note unique characteristics of the ciliates found. Also, the soil composition will be determined from the falcon tube in the last lab.

Procedure

  1. Retrieved the Falcon tube from the tube stand and observed if there is a distinct separation between the materials in the Falcon tube
  2. A ruler was used to measure the different layers present in the Falcon tube and was recorded in the lab notebooks.
  3. Measure the total height of the sample and divide the measure of sand, clay, and silt by the total height.
  4. Once the values were determined, the researchers searched for ciliates once again.

Results

Total height = 6.2 cm

Clay = 0.3 cm

Silt = 0.5 cm

Sand = 1.9 cm

Clay % = 11.1%

Silt % = 18.5%

Sand = 70.37%

Conclusion

  • After this lab, the researchers were able to determine the soil composition and hence the soil type. It was difficult to locate any ciliates in the sample which can be attributed to the loss of ciliates when the sample was left out.