August 31

LAB 2: Ciliates Challenge

Objectives: 

  • Learn how to use the dissecting microscope correctly
  • Learn to observe and characterize ciliates under dissecting microscope

Purpose: The purpose of this experiment is to learn how to use a dissecting microscope to examine and identify unknown ciliates. We will then use observations to describe characteristics and compare them to drawings.

Procedure:

  1. Obtain a clean well plate.
  2. Using 6 pipettes, place each of the unknown samples into separate wells. Be sure to label each well with the corresponding sample.
  3. Observe each of the samples under a dissecting microscope. Adjust if needed to obtain a clear image. Record characteristics of each to fill in the following table.
  4. Compare observations with the information provided on ciliates in order to identify each.

Data/Observations:

Unknown # Shape Size Movement Location Characteristics
1 Short, rod-like, round Tiny Fast Dispersed Change in direction easily
2 Round Tiny Fast; frequent twirling Grouped; dispersed Constant twirling motion
3 Rod-like Small Fast; glides like a snake grouped Faster than 1 and 2
4 Flat Medium Slow; glides grouped/dispersed Tapered off body
5 Skinny rod-like Medium to large Slower; changes in direction Grouped Very malleable body
6 Long thick body Large Swimming motion Dispersed Constantly moving

Sketches: submitted seperate

Storage:

  1. Clean table area and cover and store dissecting microscope
  2. Bleach and rinse well plate thoroughly. Let dry.

Conclusion: 

In conclusion, by observing and characterizing different types of ciliates through the use of dissecting microscopes, we were able to identify ciliates by their physical traits and movements in an attempt to understand and explain the functions of these structures.

August 31

Ciliate Challenge

Objective

The objective of the Ciliate Challenge was to introduce ourselves to the dissecting microscopes and the basics of ciliates by investigating unknown cilia. This will help us throughout the lab as we do more investigative discoveries with ciliates.

Purpose

The purpose of this lab was to learn to identify different ciliates through the dissecting microscope, through certain characteristics we learned about before and in class.

Procedure

  1. Set up the dissecting microscope by taking off the dust cover, turning it on and adjusting the clarity and magnification.
  2. Obtain six unknown samples of ciliates, labeled 1-6.  
  3. Obtain six pipettes, each labeled 1-6 as well.
  4. Obtain a microplate with at least six wells.
  5. Starting with the first labeled unknown sample, pipette the cilia into a well, filling it to the top, with the corresponding pipette.
  6. Place under microscope and record observations on the shape, size, movement, location, and any other observation you can find.
  7. Repeat with the other five samples.
    1. Note: Make sure you handle the samples with the corresponding pipettes in order to avoid crossing samples.
  8. Once done, rinse out microplate and spray with bleach.

Data

# Shape Size Movement Location Identification Other
1 Circular On 40x they were 1/40th of the relative point None Bottom of the well

Aspidisca

Dark Brown

 

2 Oval/Clumpy On 40x they were 1/10th of the relative point Few were mobile Mixed evenly thoughout

Euplotes

Green/Brown
3 Triangular/ Icecream cone shape On 40x they were 1/60th of the relative point None Bottom of the well

Metopus

Transparent
4 Circular On 25x they were relatively large Very mobile Top of the well

Lembadien

Transparent
5 Oval On 40x there were 1/10th of the relative point None Bottom of the well

Holostlena

Green
6 Circular On 40x they were relatively small None Mixed evenly thoughout

Paramecium

Large amount

Conclusion

In conclusion, this lab helped us gain exposure to ciliates and their characteristics, in addition to the dissecting microscope. This will be beneficial moving forward with our labs, because we will feel more comfortable with identifying and classifying ciliates and using the lab equipment.

August 31

Lab 2 Post-Lab, The Ciliate Challenge 8/30/18

Objective:

The objective of this lab was to familiarize us to using the dissecting microscopes to observe microscopic organisms. The lab instructor had the goal for us to learn how to operate dissecting microscopes efficiently and being able to identify unknown ciliates by using information references and our basic knowledge of ciliates.

Purpose:

The purpose for this lab was to get us to understand the procedure of how to properly work in a lab and how set up our lab notebooks for recording data. Also this lab had the purpose to teach lab safety and how to use a dissecting microscope correctly.

Procedure;

  1. All students were placed in a team of three and each group were given  24 well plates, dissecting microscopes, six pipets and six unknown samples in closed test tubes.
  2. Each group member prepared their microscope by uncovering it and adjusting it to satisfy their preference in order for them to accurately observe the microscopic organisms.
  3. The group members then prepared their lab journal by making a chart of all the information they needed to collect for each of their samples. The information gathered for each sample included the organism’s number, shape, relative size, movement, extra characteristics, a sketch and identification.
  4. The group members divided the six samples between them, each member had to observe and identify only two samples.
  5. Each group member used aseptic techniques to prepare their sample for observing  by carefully using a pipet to obtain a sample and place it onto one of the 24 well plates. All six of the samples were labeled with a number in order to prevent confusion.
  6. Each group member observed their sample individually and prepared their second sample with the same procedure used for first sample (step 5).
  7. While observing the sample, each group member noted all the information needed for identifying the ciliate.
  8. A reference guide of multiple ciliates was used to draw comparisons and help identify the samples.
  9. Lastly each group member sketched their sample and recorded their ciliate name once they identified it.

 

Unknown # Shape Relative Size Movement
1 Circular/round Smaller than other cilialtes samples but narrow. Very fast and quick
2 Round with a crescent shape Relatively small and a similar to a circle. Gliding while spinning
3 cigar shape Relatively big spinning/spiraling
4 Oval shape. Black dot near its front. Relatively big with a large front compared to tail. Large contractions when moving
5 long/narrow shape. End bends slightly Small, less than 10% field of view. Fast, worm like movement. Contrast slightly
6 Cone/trumpet shape. Large open front and narrow end. Very small similar to size of #5 Some were attached to plant surface. Others where fast and free swimming.

 

#1

Sketch/Identification:

The subject was too small and fast to be able to accurately identified and sketched

#2

Characteristics- Short ridges on the bottom and has cirri to help with movement.

Identification:  Aspidisca

#3

Characteristics: Large dot near the front that possibly could be an organelle.

Indentification: Paramecium

#4

Characteristics: small narrow shape with multiple small black circles that covered the inside of the organism.

Identification: Frontonia

#5

Characteristics: Brown color but had a white transparent circle on the front of the organism. Also within the organism were block circles that were identified to be organelles.

Identification: Blepharisma

#6

Characteristics:Unique trumpet shape with an opening on the front of the organism. The sample had a light blue and green mixture of color.

Identification: Stentor

Storage:

Our group cleaned the 24 plate wells by washing them with a bleach mixture and water. In order for the 24 plate wells to dry we placed them upside down above a piece of paper towel to avoid spilling water on the table. The six pipets and samples were then placed into the flume pit. The dissecting microscopes were put away by being covered and unplugged, the cord was wrapped  around the arm of the microscope. Then we disinfected the table and dried it by using paper towels.

Conclusion:

In conclusion, this lab helped our group become comfortable with the microscopes and gave us a sense of how to properly work in a lab and use our lab notebooks.  Our group was able to get a introduction into ciliates and began to understand some of their characteristics and their behavior. The first sample was not able to be identified but this was due to the subject being too small and fast that could not allow us to accurately identify it. Since this was our first lab and introduction to ciliates our identifications cannot be a hundred precent accurate but our group tried to the best of our ability to label these microscopic organisms. In the upcoming labs our group will have a better sense of a lab setting and will be able to work more efficiently than before.

Future steps:

For the future, our group could take less time trying to adjust the microscope to fit our needs since we gained beneficial information to handle the dissecting microscopes.

 

August 31

Ciliate Challenge Lab 8/30/18

Objectives:

1. To learn how to properly use a microscope, including:

-correctly handling the microscope when moving it from one location to another

-adjusting the focus and zoom knobs of the microscope

2. To be introduced to ciliates, as well as how to view and observe them, and to obtain basic information about different types of ciliates.

3. To gain experience conducting a lab, including:

-following procedures

-recording data

 

Purpose:

The purpose of the Ciliate Challenge lab was to observe 6 different types of ciliates, and to identify their names based on observations made along with identification sheets, which contained information about the distinct characteristics of different ciliates. To identify the ciliates species, one needed to observe the shape, color, size, and behavior of each ciliate they were observing. This lab involved developing the skill to use a microscope properly, as well as making detailed observations, and finding results based on those observations.

 

Procedure:

1. Set up the area in which the lab would take place. Make sure that hallways are clear of any objects. Ensure that the pipettes are clean, and that the wells being used are not contaminated.

2. Set up the microscope. Uncover the microscope and adjust the location of the device. Adjust the two lenses to be the same width as the space between the observers eyes. Plug in the microscope, and have the focus set to the lowest setting at the beginning.

3. Designate which unknown ciliates each member of the group will observe and attempt to identify.

4. Label the wells that will be used. Use the corresponding pipette to transfer the ciliate into the well. Be sure not to contaminate either the pipette, test tube, or well(s).

5. Use the zoom and focus knobs to obtain a crisp, close view of the ciliates in the well.

6. Record observations based on the guidelines: shape, relative size, movement, characteristics, sketch.

7. Use the information provided in the lab binder to attempt to identify each ciliate observed.

8. Collaborate and share data with each lab group member.

9. Reset the microscope arm to a better height if necessary, turn of the light, and unplug and cover the microscope.

10. Rinse out the wells with water, then spray bleach, and then place the well to dry.

11. Use the Windex to clean the table, then dry with paper towels.

 

Observations:

Unknown # Shape Relative Size Movement Characteristics, Location Identification
1 circular, round smaller than other ciliates very fast difficult to keep in view, very fast speed; located near surface unable to be identified due to speed and small size
2 round with a crescent shape relatively large gilding while spinning short cilia, observable ‘organelle’ stretching from bottom around the edge of its body; located below surface Aspidisca
3 ‘cigar’ shaped very small very fast, spiral movement clear body with a single black dot on the tip; located on the surface Paramecium
4 oval shaped relatively small medium speed, circular pattern of movement compressed itself to move, its movement was similar to that of a worm; located on surface Frontonia
5 long narrow shape, bent at end very small contracted while moving, relatively slow brown color, transparent near front, black spots near end; located near surface; located close to surface Blepharisma
6 cone, trumpet shape, large open front and narrow end similar size to #5 attached to material, fast when swimming freely very wide front; located on surface Stentor

 

Storage:

Our samples were not stored and labeled.

 

Conclusions:

Using knowledge about ciliates, it is possible to identify them in a lab. Any error could have resulted from slight contamination between pipettes and test tubes, or from different lighting from the microscope. Other than that, there could be error from human observations, but since the identifications were mostly subjective anyway, this does not play as much of a role in this particular lab. I better understand the structures within cilates and how to use them to identify ciliates. I also am now more familiar with different types of ciliates than I was before conducting the lab. Moving forward, I know now that even if the results were not as expected or of the same format as expected, all results must be included and are still valid in the experiment. Despite being unable to identify unknown ciliate #1 due to its small size and fast speed, I was still able to include some results and my findings anyway. I now understand that labs are not meant to go exactly as expected, and that results are still valid even if different than expected. Now I will be able to be more open during labs, and more ready to accept whatever findings I have.

 

August 31

The Ciliate Challenge: Dissecting Microscopes 8/30/18

Objective:

The objective of today’s lab was to examine and identify six unknown ciliates.

Purpose:

The purpose of today’s lab was to learn how to use and manipulate the dissecting microscope.

Experimental Procedures:

  • Remove sheath from microscope.
  • Plug in and power on microscope.
  • Grab any test tube containing ciliates labeled 1-6 and swivel solution around.
  • Use corresponding pipette labelled 1-6 (to prevent contamination) and fill any well to just below half full.
  • Focus and Calibrate dissecting microscope and examine unknown ciliate.
  • Repeat steps 3 through 5 until all ciliates have been examined.

Data/Observation:

The data was to be organized into a chart like this:

Sample #1:

I identified sample one to contain the Paramecium ciliate. I made this observation based on the premises that it looks a lot like the image I drew.

Sample #2

I identified the unknown ciliates in sample 2 as Euplotes. I identified them as this because of the way they swam and their shape.

Sample #3 & #4

The unknown ciliates in both sample 3 and 4 were very similar. They were both relatively the same size and looked and swam alike. For this reason I classified them both as Frontonia ciliates.

Sample #5

In sample 5, these ciliates were the most unique. They were long and slow. This sample is distinctly the Spirostomum ciliates based directly on shape and size.

Sample #6

I identified sample 6 as the Stentor. This sample looked like flying bowling pins. This is closeset ciliate I could find to match.

Storage:

After the lab, my group cleaned out the wells using bleach and water. We then placed the wells on paper towels. We also moved the test tubes containing the ciliates to a different lab table.

Future Steps:

In the future I hope to become more comfortable using microscopes and identifying organisms under it.

August 31

Ciliate Challenge 1

Objective:

The objective of this lab is to familiarize ourselves with dissecting microscope and how it functions. We learned how to observe the six unknown ciliates we were given.  Another purpose of this lab was to learn the shape, size and function of ciliates. Learning to use the lab equipment was also a part of the objective of the experiment.

Purpose:

The purpose of this experiment was to familiarize ourselves with observing and characterize ciliates. We learned how to equally and fairly divide up work between lab partners and how to accurately record our data and put it into a lab notebook and blog post.

Materials:

  1. Unknown Ciliates (6)
  2. Pipets (6)
  3. Dissecting Microscope
  4. Lab Notebook
  5. CILI-CURE notebook

 

Procedure:

  1. Take the six ciliates we were given and equally divide them between lab partners.
  2. Then, we were to gently shake the tubes of the material. After that, we were to use the plastic pipet to put the 2 ciliate materials we were given into a 24- cell plate.
  3. We then placed our samples under the microscope. We were to then adjust the lighting, focus and magnetization of the microscope to correctly observe the ciliates.
  4. Observe each characteristic the the ciliates, trading them between the lab partners.
  5. Read the material given in the CILI-CURE notebook to deduce and label each ciliate.
  6. Then, finally rinse the 24-cell plate, turn off the microscope and inspect work station to make sure the area is clean.
Ciliate Shape Relative Size Location in Media Other Characteristics Movement
1 Oval 2.25x(Big) All Over Transparent Fast
2 Circular/Gnat Shaped 3x(Smallest) All Over Ant-Like Swirling Motion
3 Long Oval 4x(smaller) Spread Out / To the rim of the lens Very Small Swims Straight/ Back and Forth
4 Long Oval 4x(Small) Clumped together all over Colored/ Reddish pink Slow Swirling Motion
5 Thin Long Oval 2x(Biggest) Mainly in Center Slower Than other ciliates Floating and swimming in a straight line
6 Oval/Blob Like 4x(Bigger) All Over Flat/ Cup-Shaped Attached to algae my Myconeme

 

IMG_1204 2-1dwefcb

Conclusion:

Through this experiment, I have learned how to use a dissecting microscope, observe and characterize ciliates, and work well with a group when making discoveries. Although I wish we could have ha the access to see more internal structures of the ciliates, I thoroughly enjoyed my first experience with them.

August 31

Lab 2: Ciliate Challenge

Objective:

The objective of the Ciliate Challenge Lab is to learn how to use the dissecting microscopes and learn how to identify the ciliates.

Purpose:

To identify the ciliates using their individual characteristics like shape, size, movement, and speed.

Procedure:

  1. Plug in dissecting microscope and get the lense into focus.
  2. Use pipette, labeled to match a test tube, to take a small sample of the ciliates and place it into its designated well.
  3. Repeat step 2 for each of the ciliate test tubes.
  4. Put pipette back into pipette holder, and place the test tubes back into their holder too.
  5. Put the wells under the microscope and observe each individually and fill in the table accordingly.
  6. Draw each of the ciliates to the best of your ability, and make any final observations.
  7. One finished observing your ciliates, take the wells and wash them under the sink with bleach.
  8. Place the wells upside down on the towels to dry for the next group.
  9. Clean your table.

Observations/Data

Unknown # Shape Relative Size Movement Location in Media Other Characteristics Name
1 Flat and oval like

Very Small

Observed at 40x

Twisting Motion Middle/bottom Very small, fast, and somewhat translucent Euplotes
2 Flat and oval like

Small, spread out (flat)

Observed 40x

Complete Bodily rotation Middle/Bottom Slow Jerky Movement Aspidisca
3 Grain Shaped

Medium

Observed at 40x

Circular Twisting motion

 

Seen Everywhere in the wells Swim fast, seems to swim without direction Paramecium
4 Grain shaped

Medium

Observed at 40x

Twisting Motion Top and Bottom of the Well Swims slower, seems to stay level not much movement up or down Paramecium
5 snake (tube) shaped

Large

Observed at 40x

Moves side to side Lower in the well Copies the motion of a snake when swimming Spirostomum
6 Flower Before Blooming

Large

Observed at 40x

Twisting motion Closer to the Edges of the well Green Color Stentor

Drawings:

Conclusion:

We were able to list characteristics of each of the ciliates and make our best predictions as to what the name of each sample is. What I plan to do next is to use a more powerful microscope to get a better image of each of the ciliate samples. This will help me to better identify the ciliates and make better observations in the future.

 

 

August 31

Ciliate Challenge Lab 2


Introduction/Background:

Ciliates are a part of the Eukaryotic domain. They are unicellular protists that have very distinct hairlike structures surrounding their cell body. These hairlike structures are known as cilia. The cilia are used for movement and feeding. Ciliates consume bacteria and algae, as well as provide nutrients for organisms at higher trophic levels.  Vacuoles are abundant within the ciliate, allowing for extra waste storage. The purpose of this lab was to use the dissecting microscopes to observe and identify different ciliates through analysis of their structure and function.

Materials:

  • Dissecting microscope
  • 6 pipets
  • Wells
  • 6 test tubes
  • ciliate solution
  • lab notebook
  • pen

Procedure:

  1. Wipe down work surface as to avoid contamination
  2. Set up Microscope
  3. Retrieve pipettes, wells and test tubes
  4. Choose 2 of the 6 test tubes labeled 1-6 (I chose 3 & 4)
  5. Use a pipet to fill half of a well with the first ciliate solution
  6. Observe movement, structure and color of ciliates
  7. Record observations in lab notebook
  8. As to avoid cross contamination, use new pipet to fill half of the second well with your second ciliate solution
  9. Repeat steps 6 & 7
  10. Use observations to identify ciliates
  11. Clean out wells with water and bleach
  12. Put microscope away

 

Results: 

Unknown Ciliate #  Shape  Relative Size  Movement  Location   Other Characteristics  Sketch and identification 
1  Ovular, skinny, long   

Swims, 

Very fast 

Middle of solution 

Transparent, 

Black dot at tip 

Paramecium 
2 

Circular,  

flat 

Very tiny @ 40x 

Swims, 

Very fast 

Dispersed   C shaped  Euplotes 
3 

Ovular, long 

 

Small,  

1/16 @ 40x 

 

Swims, 

Quick spins 

(corkscrew-like) 

Dispersed  

Clear,  

Organelles densely packed on one side 

Frontonia 
4  Tubular, wider in middle 

Very small,  

1/32 @ 40x 

Swims, 

Slower spins 

dispersed  Pinkish, red  Spirostomum 
5  Round, wormlike 

Small, 

1/16 @ 40x 

swims  dispersed  Very thin  Spirostomum 
6  Bell shape  Medium, 1/8 @ 40x  swims  Middle of solution   green  Stentor 

 Sketches:

Conclusion:

Different ciliates are created with subtle differences in structure. Their unique structure helps them to carry out their specific function within their designated ecosystem. The dissecting microscope was useful in observing the structure of these ciliates, which further helped identify the type of ciliate.

August 31

LAB 2 Ciliate Challenge 8/30/18

 

Objective: The objective of the lab is to use a dissection microscope to locate cilia in water, and to also identify them.

Purpose: To learn how to properly handle and use a dissecting microscope and to identify different cilia by comparing their characteristics

Procedure:

  1. Obtain a dissecting microscope.
  2. Learn to focus it.
  3. Clean my lab area with proper solutions.
  4. Obtain a clean well plate.
  5. Using plastic pipets to extract unknown cilia from a test tube and filling the well plate about half way.
  6. Repeat step 5 for the remaining 5 test tubes.
  7. Observe each one and record its shape size movement location other characteristics, and sketch it.
  8. Compare the ciliates to each other and provide a tentative identification with reasoning.
  9. Clean up by cleaning microscope, unplugging it, and covering it. Rinse the well plates with bleach and then rinse with water and invert on a drying paper.

Data/Results:

Identification:

  1. Euplotes
  2. Frontonia
  3. Paramecium
  4. Blephorism
  5. Spirostomum
  6. Stentor

Conclusion: I learned how to better identify them by the way they move, their size is related to their location, and how the location of the light source changes the way I see them.

Storage: We bleached the well plate and left them to dry on the back counter.

Future Goals: Since we were able to locate and identify cilia in water, the next step would be to do the same thing in soil ciliates. Also to be able to identify them faster by certain characteristics and better use of the microscope.