In-Silico Results Figure Making (3/18/19)
Rationale:
Work on the research poster for scholar’s week.
Procedure:
- Divided class into teamsto work on different sections.
- Brainstormed possible figures to be used for the “In-Silico Results” section.
- Collected and organization data from PhageNotes on which databases supported the predicted functions.
- Collected cluster data and formed graph.
Results:
The graph below shows brainstormed figures to show the Phamerator number and cluster that were created using not PhagesDB and Phamerator data.
The table below shows the supported predicted function data collected where 1 represents that the predicted function was supporting and 0 represents that the predicted function was not supported.
| Gene # | NCBI | Hhpred | PhagesDB | CDD |
| 3 | 1 | 1 | 1 | 0 |
| 4 | 1 | 1 | 1 | 1 |
| 7 | 1 | 1 | 1 | 1 |
| 9 | 1 | 0 | 1 | 1 |
| 10 | 0 | 1 | 0 | 0 |
| 11 | 1 | 0 | 0 | 0 |
| 14 | 1 | 1 | 1 | 0 |
| 16 | 1 | 1 | 1 | 1 |
| 17 | 1 | 0 | 1 | 0 |
| 18 | 1 | 0 | 1 | 1 |
| 19 | 1 | 0 | 1 | 1 |
| 20 | 1 | 1 | 1 | 1 |
| 21 | 1 | 1 | 1 | 1 |
| 22 | 1 | 1 | 1 | 1 |
| 25 | 1 | 1 | 1 | 1 |
| 39 | 1 | 1 | 1 | 1 |
| 45 | 1 | 1 | 1 | 0 |
| 62 | 1 | 1 | 1 | 1 |
| 77 | 1 | 1 | 1 | 1 |
| 81 | 1 | 1 | 1 | 0 |
| 85 | 1 | 1 | 1 | 0 |
| 87 | 1 | 1 | 1 | 1 |
| 93 | 0 | 1 | 0 | 0 |
| 96 | 1 | 0 | 1 | 0 |
| 98 | 1 | 0 | 1 | 1 |
Conclusion:
Since PhagesDB and Phamerator have not received the annotations for NapoleonB, the data used to create the figures to display phamerator numbers and cluster graph was not accurate.
Future Work:
Ram has offered to create his own Phamerator program to have access to the most accurate data for NapoleonB. He will focus on the cluster graph when the rest of the group will continue on the other figures such as the supportive function graph and the predicted function pie.
