August
31
8/22/2018 Washing of Soil A
Objective:
- Wash the soil sample (Soil A) to remove unnecessary material, such as dirt, rocks, and bacteria.
- Isolate possible bacteriophage found in the soil, in lysate.
Procedure:
- Aseptic Zone was prepared. Lab space was cleaned using CiDeon and wiped dry with paper towel. Ethanol (70%) was then sprayed, wiped, and evaporated. Ethanol burner was then lit on the table.
- 50 mL tube was obtained that contained the sample of Soil A up to the 12 mL mark. LB broth was then poured into tube up to 35 mL mark.
- The mixture in the tube was shaken manually for 15 minutes.
- After mixing, the tube was massed in order to find another tube with a similar mass (+/- 0.1g) that it could be placed with in a centrifuge. The 50 mL tube was found to be 55.215 g.
- 50 mL tube containing mixture of Soil A and LB broth was centrifuged for 5 minutes.
- Liquid found at the top of the soil in the tube was then filtered using a top filter and vacuum. This was to remove the bacteria from the remaining soil. 10 mL of filtrate was obtained from the filter in a 50 mL tube.
- Half (5 mL) of the filtrate was put into a 15 mL conical vial and placed in the fridge. This was the direct lysate. Vial was labeled Direct Soil A.
- 0.5 mL of Arthrobacter was added to the remaining lysate (5 mL) in the 50 mL tube. This created the enriched lysate.
- Enriched lysate was left to be shaken to be shaken until Monday (8/27).
Observations:
- After the soil sample was centrifuged the liquid was still murky. This may have lead to difficulty during the filtering,
- Filtering the lysate was difficult and took longer than other samples. Due to time, only 10 mL was obtained instead of all lysate that was available.
Results:
- No results to report since test has not been completed.
Next Steps:
- In the next lab, spot tests and plaque assays will be completed to see if bacteriophages are present in the soil sample, Soil A.