October
19
Soil Washing 10/15/2018
Rationale: Wash newly collected soil in order to get both a direct and enriched sample isolation. In addition, start soil metadata experiments.
Process:
- Wash table and set up aseptic zone
- Added ~10 mL LB broth to ~2 mL soil
- Shook and vortexed for 15 minutes
- Centrifuged for 10 minutes
- Filtered with syringe filter
- used ethanol to constantly clean tip
- ended with ~7 mL for enriched isolation and ~1 mL for direct isolation
- Added 0.5 mL arthro to enriched isolation
- Incubated enriched for 48 hours
- Stored direct in fridge
Soil Metadata
- % H2O
- mass of dry soil and weigh boat = 6.66 g
- mass of wet soil and weigh boat = 6.77 g
- mass of H2O = 0.11 g
- mass of wet soil = 4.45 g
- % H2O = 0.11 g / 4.45 g * 100% = 5.27%
- pH
- added pinch of dirt to pH tube
- filled with DI
- shook for 10 seconds
- held pH paper in for 45 seconds
- pH = 6.0
- sand/silt/clay
- added to falcon tube:
- 4 mL soil
- 8 mLÂ deionized water
- 3 drops dispersion oil
- shook for 45 seconds
- let sit under hood for 48 hours
Next steps: Perform spot test to check for any plaques.