Discovering Supercluster 45806 4/15/19
Rationale: After talking to Dr. Pope at the phage emporium I decided the best move is to look at modules containing genes that originate in bacteria to find more superclusters. By finding more superclusters I can compare against the one I’ve already found to make the claim that these are a thing.
Tools: PhagesDB, Phamerator
Procedure:
1. I started by searching through phams in phagesDB that are called as cas4 exonucleases.
2. I looked at the phamerator maps of multiple clusters containing a cas4 exonuclease and tried to find patterns in the gene synteny.
3. Discovered another instance of what might be a supercluster that contained a module of DNA primase followed by a DNA polymerase.
Results:
Clusters found to contain similar synteny and the 45806 primase module:
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AZ
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BB
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BB1
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BB2
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BJ
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BL
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EB
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EH
Conclusions and Future Work: This method of discovering new superclusters seems to work quite well I’m going to continue looking for more superclusters so I can compare them against each other.