Rationale: Begin brainstorming ideas for individual project

Process:

1. ideas:
   • investigate different plaque morphologies
   • investigate host range
   • create program to analyze pharmerator maps and analyze information in a new way

Conclusion:

• still need an idea because all of the above had different problems of some sort

Next Step:

solidify an idea

Rationale: Work on parts of poster as a class to compete a final version

Process:

1. began working in graphic design group to design small images to put onto the poster
   1. Main contributions:
      1. created the worst design that was too small
      2. found the exact code for the color used on the poster
2. Joined Ram’s group to help create data figures for in silico results
   1. main contributions:
      1. created a c++ program that parsed through a text block generated from a pharmerator image to extract different NapoleonB information

Results:

code:

#include <iostream>
#include <fstream>
#include <cctype>
#include <string>

using namespace std;

struct Entry {
    string id;
    int code;
    int num;
};


int main() {
     ifstream in;


     in.open("data.txt");


     int count = 0;
     int ecap = 100;
     Entry *entries = new Entry[ecap];

     string save[5000];
     int scnt = 0;
     char name[40];
     char num[10];
     int nc = 0;
     char a[40];
     char *b;

     while ( in >> a ) {
         save[scnt] = a;
         char *da = a;

         while (*da != '\0')
         {
             if (*da == 'i')
             {
                 da++;
                 if (*da == 'd') {
                     da++;

                     if (*da == '=')
                     {
                         char *dname = name;
                         da += 2;

                         while (*da != '"') {
                             *dname = *da;
                             dname++;
                             da++;
                         }

                         *dname = '\0';
                         //cout << name << endl;
                         entries[count].id = name;
                         count++;
                         //cout << entries[count].id << endl;
                     }
                 }
             }
             da++;
         }

         if ( a[0] == '(' )
         {
             //cout << save[scnt -1] << endl;

             char *na = a;
             char *dnum = num;

             na++;

             while ( *na != ')' )
             {
                 *dnum = *na;
                 dnum++;
                 na++;
             }
             *dnum = '\0';

             entries[nc].num = atoi( num );

             string codeLine = save[scnt-1];

             string codeS = codeLine.substr(codeLine.find(">") + 1);


             entries[nc].code = stoi( codeS );
             //cout << entries[nc].code << " " << nc << endl;
             nc++;

         }

         scnt++;

     }

     in.close();

     //bubble sort

    Entry temp;
    bool madeAswap;

    do
    {
        madeAswap = false;
        for ( int i = 0; i < 100; i++ )
        {
            if ( entries[i].num > entries[i + 1].num )
            {
                temp = entries[i];
                entries[i] = entries[i+1];
                entries[i+1]= temp;
                madeAswap = true;
            }
        }
    } while ( madeAswap );

    for ( int i = 0; i < 100; i++ )
    {
        cout << entries[i].num << ","
             << entries[i].id << ","
             << entries[i].code << endl;
    }





     return 0;
}

Generated List:
1,NAPOLEONB_DRAFT_30,8973
1,NAPOLEONB_DRAFT_46,2172
2,NAPOLEONB_DRAFT_18,17808
2,NAPOLEONB_DRAFT_28,620
2,NAPOLEONB_DRAFT_82,9032
3,NAPOLEONB_DRAFT_29,9160
3,NAPOLEONB_DRAFT_80,6235
4,NAPOLEONB_DRAFT_35,5503
4,NAPOLEONB_DRAFT_64,23957
4,NAPOLEONB_DRAFT_66,14746
6,NAPOLEONB_DRAFT_43,14427
6,NAPOLEONB_DRAFT_96,5481
7,NAPOLEONB_DRAFT_94,16425
8,NAPOLEONB_DRAFT_78,7010
8,NAPOLEONB_DRAFT_88,16636
9,NAPOLEONB_DRAFT_90,2220
10,NAPOLEONB_DRAFT_17,15199
10,NAPOLEONB_DRAFT_89,17851
11,NAPOLEONB_DRAFT_27,20203
11,NAPOLEONB_DRAFT_40,2745
11,NAPOLEONB_DRAFT_65,15086
12,NAPOLEONB_DRAFT_55,3201
13,NAPOLEONB_DRAFT_63,16469
14,NAPOLEONB_DRAFT_21,1334
14,NAPOLEONB_DRAFT_22,5598
14,NAPOLEONB_DRAFT_31,1350
14,NAPOLEONB_DRAFT_32,12456
14,NAPOLEONB_DRAFT_33,7647
14,NAPOLEONB_DRAFT_34,13454
14,NAPOLEONB_DRAFT_36,15534
14,NAPOLEONB_DRAFT_4,24501
14,NAPOLEONB_DRAFT_41,4750
14,NAPOLEONB_DRAFT_45,15236
14,NAPOLEONB_DRAFT_47,9175
14,NAPOLEONB_DRAFT_48,21289
14,NAPOLEONB_DRAFT_49,8333
14,NAPOLEONB_DRAFT_50,4594
14,NAPOLEONB_DRAFT_51,5790
14,NAPOLEONB_DRAFT_52,2845
14,NAPOLEONB_DRAFT_57,11576
14,NAPOLEONB_DRAFT_59,11096
14,NAPOLEONB_DRAFT_6,21245
14,NAPOLEONB_DRAFT_60,15626
14,NAPOLEONB_DRAFT_67,6336
14,NAPOLEONB_DRAFT_68,7770
14,NAPOLEONB_DRAFT_70,9736
14,NAPOLEONB_DRAFT_72,9734
14,NAPOLEONB_DRAFT_73,24174
14,NAPOLEONB_DRAFT_74,19891
14,NAPOLEONB_DRAFT_75,12457
14,NAPOLEONB_DRAFT_76,8135
14,NAPOLEONB_DRAFT_79,18042
14,NAPOLEONB_DRAFT_83,18383
14,NAPOLEONB_DRAFT_84,23835
14,NAPOLEONB_DRAFT_85,11536
14,NAPOLEONB_DRAFT_86,9686
14,NAPOLEONB_DRAFT_91,2726
14,NAPOLEONB_DRAFT_92,23725
14,NAPOLEONB_DRAFT_93,6962
15,NAPOLEONB_DRAFT_1,23265
15,NAPOLEONB_DRAFT_25,10017
15,NAPOLEONB_DRAFT_37,3102
15,NAPOLEONB_DRAFT_39,14856
16,NAPOLEONB_DRAFT_26,25449
17,NAPOLEONB_DRAFT_87,21252
19,NAPOLEONB_DRAFT_10,1045
20,NAPOLEONB_DRAFT_11,17557
21,NAPOLEONB_DRAFT_53,15168
21,NAPOLEONB_DRAFT_69,24820
23,NAPOLEONB_DRAFT_95,24540
24,NAPOLEONB_DRAFT_56,24917
32,NAPOLEONB_DRAFT_54,12742
36,NAPOLEONB_DRAFT_13,9387
37,NAPOLEONB_DRAFT_58,8182
38,NAPOLEONB_DRAFT_24,19229
38,NAPOLEONB_DRAFT_38,24858
41,NAPOLEONB_DRAFT_23,1881
46,NAPOLEONB_DRAFT_42,15962
46,NAPOLEONB_DRAFT_77,9657
47,NAPOLEONB_DRAFT_71,9303
56,NAPOLEONB_DRAFT_97,17850
62,NAPOLEONB_DRAFT_8,15225
83,NAPOLEONB_DRAFT_3,13517
84,NAPOLEONB_DRAFT_12,943
84,NAPOLEONB_DRAFT_2,2026
84,NAPOLEONB_DRAFT_44,24949
85,NAPOLEONB_DRAFT_100,24878
85,NAPOLEONB_DRAFT_15,12693
85,NAPOLEONB_DRAFT_19,21786
85,NAPOLEONB_DRAFT_20,17763
85,NAPOLEONB_DRAFT_5,4824
85,NAPOLEONB_DRAFT_61,19831
85,NAPOLEONB_DRAFT_62,19129
85,NAPOLEONB_DRAFT_7,9738
85,NAPOLEONB_DRAFT_81,24076
85,NAPOLEONB_DRAFT_9,16027
85,NAPOLEONB_DRAFT_98,20968
85,NAPOLEONB_DRAFT_99,1026
114,NAPOLEONB_DRAFT_14,4461
114,NAPOLEONB_DRAFT_16,4461

Next Steps:

Begin individual project