February
15
FEBUARY 11TH AND 13TH- LABS
FEBUARY 11TH, 2019
- OBJECTIVE:
- Annotate assigned Napoleon B genes
- PROCEDURE
- FasA file of Napoleon B was run through gene mark, and was downloaded into DNA Master
- The file in DNA master was auto-annotated
- Genemark was analyzed to determine the start of gene 5
- Phages DB was used to determine the protein function, and was used to determine the relation to phage Tribby
- RESULTS:
- Gene 5
SSC:2458 – 2826, CP:Yes, SCS:Both, ST:NI, BLAST-Start:Aligns with gp NCBI BLAST q:s , Aligns with Tribby gp6 PhagesDB BLAST q1:s1 1 6E-67, Gap:25bp gap, LO:Yes, RBS:Kibbler7 and Karlin Medium 2.869 -3.568 No, F:NKF, SIF-BLAST:NKF Supported by PhagesDB BLAST Tribby gp6 , , SIF-HHPred:NKF, SIF-Syn:NKF
- CONCLUSION:
- Gene 5 is partially annotated and needs to be finished
- FUTURE STEPS:
- Finish annotating gene 5, and the 3 other assigned genes
- FEBRUARY 13TH, 2019
- ABSENT