February 15

FEBUARY 11TH AND 13TH- LABS

Print Friendly, PDF & Email

FEBUARY 11TH, 2019 

  • OBJECTIVE: 
    • Annotate assigned Napoleon B genes 
  • PROCEDURE
    • FasA file of Napoleon B was run through gene mark, and was downloaded into DNA Master 
    • The file in DNA master was auto-annotated
    • Genemark was analyzed to determine the start of gene 5
  • Phages DB was used to determine the protein function, and was used to determine the relation to phage Tribby 
  • RESULTS: 
    • Gene 5 

SSC:2458 – 2826, CP:Yes, SCS:Both, ST:NI, BLAST-Start:Aligns with  gp NCBI BLAST q:s  , Aligns with Tribby gp6 PhagesDB BLAST q1:s1 1 6E-67, Gap:25bp gap, LO:Yes, RBS:Kibbler7 and Karlin Medium 2.869 -3.568 No, F:NKF, SIF-BLAST:NKF Supported by PhagesDB BLAST Tribby gp6   , , SIF-HHPred:NKF, SIF-Syn:NKF

  • CONCLUSION:
    • Gene 5 is partially annotated and needs to be finished
  • FUTURE STEPS: 
    • Finish annotating gene 5, and the 3 other assigned genes 
  • FEBRUARY 13TH, 2019
  • ABSENT 


Posted February 15, 2019 by laurenfoley_foley1 in category Lauren Foley

Leave a Comment

Your email address will not be published. Required fields are marked *

*