February 8

2/6 ~ PhageNotes Annotations

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Rationale: Finish annotating the genes assigned in class. Post annotations to master data sheet (PhageNotes) for checking.

 

Materials:

  • DNA Mastering
  • PhagesDB
  • NCBI Blast
  • Computer
  • Phamerator
  • PhageNotes

Procedure:

  • Load up DNA Mastering
  • Opened up PhagesDB and NCBI BLAST scanning website
  • Learned about annotating reverse genes
    • Upstream gap is reversed
    • Indicate direction on phage notes
  • Learned about Phamerator and PhageNotes
  • Added annotations into PhageNotes

Observations:

Finalized annotation for gene 61

Finalized annotation for gene 24

Conclusion/Next Steps:

  • After this practice, will be ready to annotate NapoleonB. The practice with PhageNotes and DNA Mastering will allow continual and smooth annotations throughout the rest of the semester.


Posted February 8, 2019 by justin_yu1 in category Justin Yu

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