January 30

1.30.19 Elesar Annotation

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Rationale:

To continue practicing genome annotation with DNA Master by annotating two genes of Elesar’s genome.

Procedures:

  1. Used an already opened and auto-annotated copy of Elesars genome on DNA Master.
  2. Annotated genes 48 and 49 of Elesar.

Results:

Gene 48: SSC: [34620, 35063], CP: yes, SCS: Both, BLAST-Start: Elesar, gp45, PhagesDB, Query 1 to Subject 1, 100%, 6e-83 Gap: 113bp gap, LO: yes, RBS: Kibler7, Karlin Medium, 2.611, -3.929, no

Gene 49: SSC: [35215, 36054], CP:yes, SCS: Both, BLAST-Start: Nandita, NCBI, Query 1 to Subject 1, 95%, 8e-165, Gap: 151bp gap, LO: yes, RBS: Kibler7, Karlin Medium, 2.970, -3.344, yes

Conclusions:

From the results gathered it can be concluded that I learned more about how to annotate genomes on DNA Master.

Next Steps:

The next step will be to continue practicing with DNA Master in annotating Elesar’s genome in order to eventually annotate the genome of the phage NapoleonB.


Posted January 30, 2019 by nathan_newton1 in category Nathan Newton

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