November
30
11/26/18 DNA Extraction and Nanodrop
Previous Results:
- The final result of the phage precipitation was a pellet in the bottom of the 50 mL tube. This was the condensed phage that will be used for DNA extraction
Objective:
- To complete DNA extraction without contamination and obtain enough DNA to continue analyzing it
- Have enough time to complete the nanodrop process and have positive results
Procedure:
- The 50 mL tube containing the phage pellet was brought to room temp
- 0.5 ml sterile water was added to tube and mixed to resuspend the pellet
- 2 ml of DNA Clean-Up Resin at 37 degrees Celsius was added and mixed
- Pellet was separated equally into 2 microcentrifuge tubes and spun at 12.5 x 1000 g for 3 minutes
- Supernatant was removed from the microcentrifuge tubes without disturbing the cloudy precipitant (DNA) and add 1 ml 80% Isopropanol to the tubes each
- Step 5 was repeated 2 times, then once more but without removing the alcohol
- Solution was then transferred to two columns and the vacuum was used to filter the liquid
- Columns were centrifuged at 12,000 g for 5 min
- 100 microliters of Elution Buffer at 80 degrees Celsius was added to each column. Left to sit for 1 minute
- Columns were centrifuged at 12,000 g for 1 minute
- Two tubes of DNA sample were combined into 1 microcentrifuge tube and labeled. Phage was named “Pippa”
- The nanodrop machine was then used by adding a drop of Elution Buffer to the machine to prepare for DNA drop
- DNA drop was added and the machine provided results
Results:
- The results of the nanodrop showed the sample of DNA was not concentrated enough and had a nucleic acid reading of 43.1 ng/uL
Next Steps:
- A PCR will be dome on the DNA sample and a gel will be completed