October
26
Gel Electrophoresis (10/22/18)
Rationale:
Run a gel electrophoresis using Soil Sample E’s enriched lysate to test for presence of DNA.
Procedure:
- Obtained a flask, and added 40 mL of TBE, and 0.8 Agarose.
- Microwaved the flask until the solution was clear.
- The flask was let to be cooled before proceeding.
- Added 2 uL of Ethidium bromide into each flask.
- Poured the solutions into the tray and left to set, and after gel set, removed the combs.
- Filled the tray with TBE until covered a layer over the gel.
- Pipetted 10 uL of primer into each of the wells. , and 5 uL in the well for the ladder.
- Pipetted the ladder in the middle row, and left ends empty.
- Used left end for practice.
- Attached the apparatus and plugged into the power source.
- Imaged soil and obtained results about an hour later.
Observations/ Results :
The gel electrophoresis results came back negative, as no phage DNA was traced in Soil Sample E.
Conclusions/Next Steps:
The gel electrophoresis came out negative, and therefore can conclude that there is no phage in this soil sample. Next time I will either re-enrich a previous soil sample, or will collect new soil, enrich the new soil sample, and find the soil metadata to create a PCR and run a gel electrophoresis.