October
19
PCR 10/17/2018
Rationale: To conserve resources, we ran a pcr test on our enriched isolations to check for the presence of phage DNA.
Process:
- Wash table
- centrifuged enriched isolation
- 5 minutes at 3000 G
- added ~ 1 mL to microcentrifuge tube
- gave tube to Lathan to boil
- Prepared 4 different PCR reactions as shown in the table below
Reagents Tube 1 Tube 2 Tube 3 Pos. Control TAQ Polymerase 12.5 µL 12.5 µL 12.5 µL 12.5 µL Primer Mix 4 µL PM1 4 µL PM2 4 µL PM3 4 µL PM1 DNA RSM 1 µL 1 µL 1 µL NA DNA SJ 1 µL 1 µL 1 µL NA Pos. Control DNA NA NA NA 1 µL dd H2O 6.5 µL 6.5 µL 6.5 µL 7.5 µL - Gave tubes to Lathan to run PCR cycle in PCR machine
Next steps: Run PCR products on a gel electrophoresis to check for bands that could indicate phage DNA. Also, calculate % sand/silt/clay.