October
15
Plaque Assay 10/15/18
Rationale: Since I had washed soil from tree E earlier, I was able to run a plaque assay this class.
Procedure:
- Divided lysate equally between tubes and spun at 3000g for 5 minutes.
- Filtered 1.5mL using 0.22mm filter.
- Pipetted 10mL of filtered lysate into 0.5mL of arthrobacter and let sit for 15 minutes.
- Made top agar by placing 4mL LB Broth, 45mL of CaCl2, and 5mL of 2X TA in a 50mL tube and pipetting up and down to mix.
- Poured 4.5mL into top agar control plate then added arthro to remaining solution.
- Mixed by swirling gently then poured into plate.
Observations:
Once again, my plaque assay turned up negative. My control was contaminated with something that didn’t look like arthro. I checked the 2X TA that I was using, and it turned out to be contaminated so I will have to use a different bottle moving forward and clean my micro-pipette tips.
Interpretations and Next Steps: Since this was my last chance to conduct a plaque assay or spot test, I will have to try another way to find phages in my soil samples. One such way is PCR. Starting next class, I will find a soil sample and enrich so that I can try to find phage with PCR the following week.