October
13
Results from Second PA of Soil D and PA of Soil E (10/12/18)
Results:
No contamination or strange patterns appeared this time. The plates were negative as shown in the pictures below.
Rationale:
A plaque assay will be run with soil E enriched lysate to determine whether or not there are bacteriophages in the sample that specifically target Arthrobacter.
Procedure:
- Once an aseptic zone was established, the enriched filtered lysate from soil E was filtered with a 0.22 μL tipped syringe into a microcentrifuged tube labeled “KEA 10/12/18 FS enriched.”
- 10 μL of “KEA 10/12/18 FS enriched” was added and mixed into a conical vial which already had 0.5 mL of Arthrobacter.
- 4 mL of LB Broth, 45 μL of 1 M CaCl2, and 5 mL of 2X TA were combined into a different conical vial.
- Transferred and mixed 4.5 mL of the Top Agar mixture from the conical vial into the conical vial with the Arthrobacter and enriched lysate.
- The conical vial mixture was poured onto the plate.
- The “KEA 10/12/18 Soil E PA” plate was placed in the incubator at room temperature.
Observations:
- The following calculations were performed to determine enough LB Broth, 2X TA, and CaCl2needed for 2 plates.
Original Recipe |
X2 |
2 mL LB Broth |
4 mL LB Broth |
2.5 mL 2X TA |
5 mL 2X TA |
22.5 μL CaCl2 |
45 μL CaCl2 |
- MA plates were used instead of the regular agar plates to run the plaque assay because there was a shortage of the regular plates. These plates are just like the plates used regularly except the growth medium being used has more nutrients for the Arthrobacter to grow.
Next Steps:
If there are plaques, then the experiment will proceed with picking a plaque. If there is contamination or no plaques, new methods will be used to find a phage.