September 29

9/26 ~ Repeat of purification plaque assay

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Rationale:

Repeating the last plaque assay due to contaminated arthrobacter. Will be performing another purifcation plaque assay from the previous 10^0 lysate from 9/24 (Kept in refrigerator)

Procedure:

  • Created an aseptic zone to prevent the possibility of bacterial contamination
  • Retrieved 10^0 lysate from refrigeration and created a 10^-1 and 10^-2 dilution
    • Created by adding 90μL PB into microcentrifuge vial and adding 10μL of the previous dilution
  • Added the dilutions of lysate into separate 400μL vials of arthrobacter into infect
  • Obtained a 50mL vial and added in 16.8 mL LB Broth, 180μL 1M CaCl2, and 20 mL 2XTA (Enough for 9 plates)
  • Immediately pipetted 4.5 mL TA mixture into the arthrobacter vial(s), shook to mix, and plated
  • Let sit for 15 minutes and then incubated

Observations:

  • The control TA plate sat for less than 15 minutes
  • Surprising that the arthrobacter was the one to be contaminated, rather than the LB Broth or TA
  • Lathan explained that the bacteria in our sample most likely are not arthrobacteria anymore since there were no plaques, and rather were another strain of bacteria

10^0 plate with contamination. Interesting pattern created

10^-1 contaminated plaque assay

10^-2 exhibiting contamination

The control TA with contamination

Conclusion/Next Steps:

It was unfortunate that there as contamination since after this plaque assay, the lysate would’ve been able to be used to create a titer and web a plate. It has shifted lab time one session back. The next steps would be to analyze the results from this plaque assay and hopefully be able to create/calculate a titer and web a plate


Posted September 29, 2018 by justin_yu1 in category Justin Yu

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