September 28

Spot Test 9/24/2018

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Rationale: Perform spot test with new direct and enriched isolations to check for the presence of phages

Process:

  1. set up aseptic system
  2. made LB agar broth for sample plates and a control plate
    1. Reagents Control Sample
      LB Broth 2 mL 4 mL
      2x TA 2.5 mL 5 mL
      CaCl2 23 µL 45 µL
      arthro NA 1 mL
  3. poured 5 mL of LB agar broth into each plate and let sit for ~10 min
  4. used syringe filter to filter enriched sample
  5. pipetted 5 µL of direct isolation, enriched isolation, and phage buffer (negative control) into designated areas of sample plate and let sit for ~10 min
  6. put plates in incubator for 48 hours

soil metadata:

  1. % H2O:
    1. mass of water = 0.49 g
    2. mass of wet soil = 6.01 g
    3. 0.49 g / 6.01 g * 100% = 8.15% H2O
  2. sand/silt/clay
    1. total volume = 2.75 mL appr.
    2. sand = 1 mL appr.
    3. silt = 1 mL appr.
    4. clay = 0.75 mL apprx.

1 / 2.75 * 100% = 36.4% sand

1 / 2.75 * 100% = 36.4% silt

0.75 / 2.75 * 100% = 27.2% sand

soil metadata: sand, silt, and clay layers

 

Next steps: If the spot test is positive, perform a plaques assay with enriched isolation to check for plaques again. If the spot test is negative, look for a new soil sample outside.


Posted September 28, 2018 by rachel_melone1 in category Rachel Melone

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