September
28
Spot Test 9/24/2018
Rationale: Perform spot test with new direct and enriched isolations to check for the presence of phages
Process:
- set up aseptic system
- made LB agar broth for sample plates and a control plate
-
Reagents Control Sample LB Broth 2 mL 4 mL 2x TA 2.5 mL 5 mL CaCl2 23 µL 45 µL arthro NA 1 mL
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- poured 5 mL of LB agar broth into each plate and let sit for ~10 min
- used syringe filter to filter enriched sample
- pipetted 5 µL of direct isolation, enriched isolation, and phage buffer (negative control) into designated areas of sample plate and let sit for ~10 min
- put plates in incubator for 48 hours
soil metadata:
- % H2O:
- mass of water = 0.49 g
- mass of wet soil = 6.01 g
- 0.49 g / 6.01 g * 100% = 8.15% H2O
- sand/silt/clay
- total volume = 2.75 mL appr.
- sand = 1 mL appr.
- silt = 1 mL appr.
- clay = 0.75 mL apprx.
1 / 2.75 * 100% = 36.4% sand
1 / 2.75 * 100% = 36.4% silt
0.75 / 2.75 * 100% = 27.2% sand
Next steps: If the spot test is positive, perform a plaques assay with enriched isolation to check for plaques again. If the spot test is negative, look for a new soil sample outside.