Metadata + Plaque Assay + Spot Test
Title: Metadata, Spot Test, and Plaque Assay
Date: September 12, 2018
Rationale: The sand-silt-clay results and the % water results are ready, and the lysate is done incubating, therefore metadata can be recorded, and tests be done to check for plaques.
Procedure: Aseptic zone created by the following procedure:
- Counter washed and wiped with CiDecon
- Counter sprayed with 70% EtOH and allowed to evaporate completely (to dehydrate and kill any bacteria on the counter and avoid contamination)
- Ethanol lamp lit to create rising heat and a current that protests samples from falling contamination.
% Water: The dirt weighed 5.37 grams before evaporation and weighed 5.066 after evaporation. The following calculation yields the % water of the collected soil:
1-(5.066/5.37)= .057 = 5.7% water
Sand – Silt – Clay: 3.25 mL of soil was layered:
1 mL of sand 1.75 mL of silt .5 mL of clay
= 30.77% sand =53.85% silt = 15.38% clay
- The enriched lysate from Monday was pulled from the incubator, massed at 21.47g, and spun in a centrifuge to separate cells.
- A spot test and a plaque assay were done to assure the best chances of a phage discovery.
Spot Test Plaque Assay (All multiplied by 4 for 3 plates + negative control)
– 2.0 mL LB Broth – 2.0 mL LB Broth
– 0.5 mL Arthrobacter – 0.5 mL Arthrobacter
– 2.5 mL 2X Top Agar – 2.5 mL 2X Top Agar
– 22.5 microliters CaCl2 – 22.5 microliters CaCl2
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~ 10 microliters spotted onto plate –> put into incubator Set 15 min –> put into incubator